Practical Molecular Biology - home page.
 > Calculations > Sequence utilities.

Sequence Utilities.

       Name (not necessary):  
       Nucleotide sequence without name:
    (case insensitiv, disregarded all letters except: agctuswrymkhbdvn)


       

       Output: nucleotides in one line;
       display the initial sequence;
       display the initial sequence in the opposite (3' --> 5') direction;
       display complementary sequence in 5' --> 3' direction;
       display complementary sequence in 3' --> 5' direction;.
       display double stranded sequence.


    This program helps to manipulate with nucleic acid sequence (reverse, reverse/complement, double stranded). It is possible to perform several manipulations simultaneously.

    For translation of nucleic acids it is possible to use "6 Frame Translation" program. Rare codons may be displayed with "Search of rare codons in nucleotide sequence".


    Standard symbols for polymorphic nucleotides:
    SG,CHA,C,T
    WA,TBC,G,T
    RA,GDA,G,T
    YC,TVA,C,G
    MA,CNA,G,C,T
    KG,T  


"Practical Molecular Biology" http://molbiol.edu.ru
e-mail: pmb@molbiol.edu.ru


Rambler's Top100